Information for Peptide: QDVDNASLAR from VIME_HUMAN
1. Biological Peptide
1.1 Native Sequence
R.QDVDNASLAR.L
1.2 Peptide Properties
| Start | Stop | MW | m/z for 2+ | m/z for 3+ | pI |
|---|---|---|---|---|---|
| 208 | 217 | 1087.53 | 544.77 | 363.52 | 4.21 |
1.3 Fragment Ion Table
| AA | b Ion Series | b Ion Mass | y Ion Series | y Ion Mass |
|---|---|---|---|---|
| Q | b | y | ||
| D | b | y | ||
| V | b | y | ||
| D | b | y | ||
| N | b | y | ||
| A | b | y | ||
| S | b | y | ||
| L | b | y | ||
| A | b | y | ||
| R | b | y |
2. Synthetic Peptide
2.1 Synthetic (Internal Standard) Peptide Sequence
QDVDNASL(C6N1)AR (Modification: Stable isotope on L8 (U-13C, 15N) )
2.2 Peptide Properties
| MW | m/z for 2+ | m/z for 3+ | pI |
|---|---|---|---|
| 1094.54 | 548.28 | 365.86 | 4.21 |
2.3 Fragment Ion Table
| AA | b Ion Series | b Ion Mass | y Ion Series | y Ion Mass |
|---|---|---|---|---|
| Q | b | y | ||
| D | b | y | ||
| V | b | y | ||
| D | b | y | ||
| N | b | y | ||
| A | b | y | ||
| S | b | y | ||
| L | b | y | ||
| A | b | y | ||
| R | b | y |
2.4 Peptide Synthesis Report
Click to view/download synthesis report for QDVDNASLAR
2.5 QqQ MS/MS
Transition Table:
| Transition | m/z of Transition | Collision Energy |
|---|
2.6 Calibration Curve of Standard
Description: NONE
Experiment Description: Cells from the breast cancer cell line HS578T were lysed in 8M urea/ 100mM ammonium bicarbonate buffer on ice. The equivalent of 100,000 cells were loaded onto a SDS gel. The protein of interest was excised and ingel digestion with trypsin was performed after reduction and alkylation with TCEP and IAA. 1/4 of the resulting digest was then analyzed on a Thermo Scientific TSQ mass spectrometer.
2.7 LC-MRM Analysis of Biological and Standard Peptides Illustrates Elution Times
2.8 Pseudo MS/MS Comparison of Transition Patterns for Biological/Standard Peptides
