Information for Peptide: FNLTGLNEQVPHYR from CSK2B_HUMAN
1. Biological Peptide
1.1 Native Sequence
K.FNLTGLNEQVPHYR.Q
1.2 Peptide Properties
| Start | Stop | MW | m/z for 2+ | m/z for 3+ | pI |
|---|---|---|---|---|---|
| 34 | 47 | 1686.85 | 844.43 | 563.29 | 6.75 |
1.3 Fragment Ion Table
| AA | b Ion Series | b Ion Mass | y Ion Series | y Ion Mass |
|---|---|---|---|---|
| F | b | y | ||
| N | b | y | ||
| L | b | y | ||
| T | b | y | ||
| G | b | y | ||
| L | b | y | ||
| N | b | y | ||
| E | b | y | ||
| Q | b | y | ||
| V | b | y | ||
| P | b | y | ||
| H | b | y | ||
| Y | b | y | ||
| R | b | y |
2. Synthetic Peptide
2.1 Synthetic (Internal Standard) Peptide Sequence
FNLTALNEQVPHYR (Modification: G5 to A )
2.2 Peptide Properties
| MW | m/z for 2+ | m/z for 3+ | pI |
|---|---|---|---|
| 1700.86 | 851.44 | 567.96 | 6.75 |
2.3 Fragment Ion Table
| AA | b Ion Series | b Ion Mass | y Ion Series | y Ion Mass |
|---|---|---|---|---|
| F | b | y | ||
| N | b | y | ||
| L | b | y | ||
| T | b | y | ||
| A | b | y | ||
| L | b | y | ||
| N | b | y | ||
| E | b | y | ||
| Q | b | y | ||
| V | b | y | ||
| P | b | y | ||
| H | b | y | ||
| Y | b | y | ||
| R | b | y |
2.4 Peptide Synthesis Report
Click to view/download synthesis report for FNLTGLNEQVPHYR
2.5 QqQ MS/MS
Transition Table:
| Transition | m/z of Transition | Collision Energy |
|---|---|---|
| y3 | 475.24 | 32.0 |
| y4 | 572.29 | 32.0 |
| y5 | 671.36 | 32.0 |
| y6 | 799.42 | 32.0 |
| y7 | 928.46 | 32.0 |
| y8 | 1042.51 | 32.0 |
| y9 | 1155.59 | 32.0 |
| y10 | 1226.63 | 32.0 |
| y11 | 1327.68 | 32.0 |
2.6 Calibration Curve of Standard
Description: NONE
Experiment Description: Cells from colon caner line HCT 116 were lysed in 8M urea/ 100mM ammonium bicarbonate buffer on ice. The equivalent of 100,000 cells were loaded onto a SDS gel. The protein of interest was excised and ingel digestion with trypsin was performed after reduction and alkylation with TCEP and IAA. 1/4 of the resulting digest was then analyzed on a Thermo Scientific TSQ mass spectrometer. Sample was analyzed concurrently with internal standard
2.7 LC-MRM Analysis of Biological and Standard Peptides Illustrates Elution Times
2.8 Pseudo MS/MS Comparison of Transition Patterns for Biological/Standard Peptides
